3D structure

PDB id
6ZQE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
CUA*UUACG*CAAAG
Length
13 nucleotides
Bulged bases
6ZQE|1|D3|A|1093
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ZQE_005 not in the Motif Atlas
Homologous match to J3_4V88_034
Geometric discrepancy: 0.2399
The information below is about J3_4V88_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_23622.1
Basepair signature
cWW-tWW-tWW-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6ZQE|1|D3|C|1037
6ZQE|1|D3|U|1038
6ZQE|1|D3|A|1039
*
6ZQE|1|D3|U|1079
6ZQE|1|D3|U|1080
6ZQE|1|D3|A|1081
6ZQE|1|D3|C|1082
6ZQE|1|D3|G|1083
*
6ZQE|1|D3|C|1090
6ZQE|1|D3|A|1091
6ZQE|1|D3|A|1092
6ZQE|1|D3|A|1093
6ZQE|1|D3|G|1094

Current chains

Chain D3
18S rRNA

Nearby chains

Chain DW
40S ribosomal protein S22-A
Chain Db
40S ribosomal protein S27-A
Chain UX
rRNA-processing protein FCF1

Coloring options:


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