3D structure

PDB id
6ZQE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
CCAG*CUAGUAA*UGAUUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ZQE_012 not in the Motif Atlas
Homologous match to J3_8C3A_038
Geometric discrepancy: 0.2923
The information below is about J3_8C3A_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.2
Basepair signature
cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6ZQE|1|D3|C|1161
6ZQE|1|D3|C|1162
6ZQE|1|D3|A|1163
6ZQE|1|D3|G|1164
*
6ZQE|1|D3|C|1581
6ZQE|1|D3|U|1582
6ZQE|1|D3|A|1583
6ZQE|1|D3|G|1584
6ZQE|1|D3|U|1585
6ZQE|1|D3|A|1586
6ZQE|1|D3|A|1587
*
6ZQE|1|D3|U|1609
6ZQE|1|D3|G|1610
6ZQE|1|D3|A|1611
6ZQE|1|D3|U|1612
6ZQE|1|D3|U|1613
6ZQE|1|D3|A|1614
6ZQE|1|D3|C|1615
6ZQE|1|D3|G|1616

Current chains

Chain D3
18S rRNA

Nearby chains

Chain CJ
U3 small nucleolar ribonucleoprotein protein IMP4
Chain DF
40S ribosomal protein S5
Chain DQ
40S ribosomal protein S16-A
Chain Dc
40S ribosomal protein S28-A
Chain UA
Periodic tryptophan protein 2

Coloring options:


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