J3_6ZQF_005

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CUA*UUACG*CAAAG

Length

13 nucleotides

Bulged bases

6ZQF|1|D3|C|1082, 6ZQF|1|D3|A|1093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZQF_005 not in the Motif Atlas

Homologous match to J3_4V88_034

Geometric discrepancy: 0.4347

The information below is about J3_4V88_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23622.1

Basepair signature

cWW-tWW-tWW-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZQF|1|D3|C|1037
6ZQF|1|D3|U|1038
6ZQF|1|D3|A|1039
*
6ZQF|1|D3|U|1079
6ZQF|1|D3|U|1080
6ZQF|1|D3|A|1081
6ZQF|1|D3|C|1082
6ZQF|1|D3|G|1083
*
6ZQF|1|D3|C|1090
6ZQF|1|D3|A|1091
6ZQF|1|D3|A|1092
6ZQF|1|D3|A|1093
6ZQF|1|D3|G|1094

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DW

40S ribosomal protein S22-A

Chain Db

40S ribosomal protein S27-A