J3_6ZQF_011
3D structure
- PDB id
- 6ZQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZQF_011 not in the Motif Atlas
- Homologous match to J3_8P9A_076
- Geometric discrepancy: 0.3695
- The information below is about J3_8P9A_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
6ZQF|1|D3|C|1161
6ZQF|1|D3|C|1162
6ZQF|1|D3|A|1163
6ZQF|1|D3|G|1164
*
6ZQF|1|D3|C|1581
6ZQF|1|D3|U|1582
6ZQF|1|D3|A|1583
6ZQF|1|D3|G|1584
6ZQF|1|D3|U|1585
6ZQF|1|D3|A|1586
6ZQF|1|D3|A|1587
*
6ZQF|1|D3|U|1609
6ZQF|1|D3|G|1610
6ZQF|1|D3|A|1611
6ZQF|1|D3|U|1612
6ZQF|1|D3|U|1613
6ZQF|1|D3|A|1614
6ZQF|1|D3|C|1615
6ZQF|1|D3|G|1616
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CJ
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain DF
- Rps5p
- Chain DQ
- 40S ribosomal protein S16-A
- Chain Dc
- 40S ribosomal protein S28-A
- Chain UA
- Periodic tryptophan protein 2
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