J3_6ZQG_003

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZQG_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1066

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZQG|1|D3|A|760
6ZQG|1|D3|G|761
6ZQG|1|D3|A|762
6ZQG|1|D3|G|763
*
6ZQG|1|D3|C|773
6ZQG|1|D3|A|774
6ZQG|1|D3|G|775
*
6ZQG|1|D3|U|785
6ZQG|1|D3|C|786
6ZQG|1|D3|G|787
6ZQG|1|D3|A|788
6ZQG|1|D3|A|789
6ZQG|1|D3|U|790

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DJ

40S ribosomal protein S9-A

Chain DY

40S ribosomal protein S24-A