J3_6ZSA_002

3D structure

PDB id

6ZSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUUAC*GAUUAACCU*AGC

Length

18 nucleotides

Bulged bases

6ZSA|1|AA|A|688, 6ZSA|1|AA|A|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZSA_002 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.5911

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZSA|1|AA|G|687
6ZSA|1|AA|A|688
6ZSA|1|AA|U|689
6ZSA|1|AA|U|690
6ZSA|1|AA|A|691
6ZSA|1|AA|C|692
*
6ZSA|1|AA|G|822
6ZSA|1|AA|A|823
6ZSA|1|AA|U|824
6ZSA|1|AA|U|825
6ZSA|1|AA|A|826
6ZSA|1|AA|A|827
6ZSA|1|AA|C|828
6ZSA|1|AA|C|829
6ZSA|1|AA|U|830
*
6ZSA|1|AA|A|856
6ZSA|1|AA|G|857
6ZSA|1|AA|C|858

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial