J3_6ZSB_002

3D structure

PDB id

6ZSB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAUUAC*GAUUAACCU*AGC

Length

18 nucleotides

Bulged bases

6ZSB|1|AA|A|691, 6ZSB|1|AA|A|826

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZSB_002 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.577

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZSB|1|AA|G|687
6ZSB|1|AA|A|688
6ZSB|1|AA|U|689
6ZSB|1|AA|U|690
6ZSB|1|AA|A|691
6ZSB|1|AA|C|692
*
6ZSB|1|AA|G|822
6ZSB|1|AA|A|823
6ZSB|1|AA|U|824
6ZSB|1|AA|U|825
6ZSB|1|AA|A|826
6ZSB|1|AA|A|827
6ZSB|1|AA|C|828
6ZSB|1|AA|C|829
6ZSB|1|AA|U|830
*
6ZSB|1|AA|A|856
6ZSB|1|AA|G|857
6ZSB|1|AA|C|858

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial