J3_6ZSC_002

3D structure

PDB id

6ZSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUAC*GAUUAACCU*AGC

Length

18 nucleotides

Bulged bases

6ZSC|1|AA|A|688, 6ZSC|1|AA|A|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZSC_002 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.5892

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZSC|1|AA|G|687
6ZSC|1|AA|A|688
6ZSC|1|AA|U|689
6ZSC|1|AA|U|690
6ZSC|1|AA|A|691
6ZSC|1|AA|C|692
*
6ZSC|1|AA|G|822
6ZSC|1|AA|A|823
6ZSC|1|AA|U|824
6ZSC|1|AA|U|825
6ZSC|1|AA|A|826
6ZSC|1|AA|A|827
6ZSC|1|AA|C|828
6ZSC|1|AA|C|829
6ZSC|1|AA|U|830
*
6ZSC|1|AA|A|856
6ZSC|1|AA|G|857
6ZSC|1|AA|C|858

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial