J3_6ZSD_002

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUUAC*GAUUAACCU*AGC

Length

18 nucleotides

Bulged bases

6ZSD|1|AA|A|688, 6ZSD|1|AA|A|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZSD_002 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.5828

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZSD|1|AA|G|687
6ZSD|1|AA|A|688
6ZSD|1|AA|U|689
6ZSD|1|AA|U|690
6ZSD|1|AA|A|691
6ZSD|1|AA|C|692
*
6ZSD|1|AA|G|822
6ZSD|1|AA|A|823
6ZSD|1|AA|U|824
6ZSD|1|AA|U|825
6ZSD|1|AA|A|826
6ZSD|1|AA|A|827
6ZSD|1|AA|C|828
6ZSD|1|AA|C|829
6ZSD|1|AA|U|830
*
6ZSD|1|AA|A|856
6ZSD|1|AA|G|857
6ZSD|1|AA|C|858

Current chains

Chain AA

12SrRNA

Nearby chains

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial