J3_6ZSG_002

3D structure

PDB id

6ZSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUUAC*GAUUAACCU*AGC

Length

18 nucleotides

Bulged bases

6ZSG|1|AA|A|688, 6ZSG|1|AA|A|691, 6ZSG|1|AA|A|826

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZSG_002 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.5925

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZSG|1|AA|G|687
6ZSG|1|AA|A|688
6ZSG|1|AA|U|689
6ZSG|1|AA|U|690
6ZSG|1|AA|A|691
6ZSG|1|AA|C|692
*
6ZSG|1|AA|G|822
6ZSG|1|AA|A|823
6ZSG|1|AA|U|824
6ZSG|1|AA|U|825
6ZSG|1|AA|A|826
6ZSG|1|AA|A|827
6ZSG|1|AA|C|828
6ZSG|1|AA|C|829
6ZSG|1|AA|U|830
*
6ZSG|1|AA|A|856
6ZSG|1|AA|G|857
6ZSG|1|AA|C|858

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial