J3_6ZTJ_006

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTJ_006 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.071

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6ZTJ|1|AA|U|943
6ZTJ|1|AA|G|944
6ZTJ|1|AA|G|945
6ZTJ|1|AA|A|946
*
6ZTJ|1|AA|U|1235
6ZTJ|1|AA|A|1236
6ZTJ|1|AA|C|1237
*
6ZTJ|1|AA|G|1337
6ZTJ|1|AA|G|1338
6ZTJ|1|AA|A|1339
6ZTJ|1|AA|A|1340

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AM

30S ribosomal protein S13

Chain AW

Transfer RNA; tRNA