J3_6ZTJ_033

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6ZTJ|1|BA|A|504, 6ZTJ|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTJ_033 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1172

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6ZTJ|1|BA|G|30
6ZTJ|1|BA|C|31
*
6ZTJ|1|BA|G|474
6ZTJ|1|BA|C|475
6ZTJ|1|BA|G|476
6ZTJ|1|BA|A|477
6ZTJ|1|BA|A|478
6ZTJ|1|BA|A|479
6ZTJ|1|BA|A|480
6ZTJ|1|BA|G|481
6ZTJ|1|BA|A|482
6ZTJ|1|BA|A|483
6ZTJ|1|BA|C|484
*
6ZTJ|1|BA|G|496
6ZTJ|1|BA|A|497
6ZTJ|1|BA|G|498
6ZTJ|1|BA|U|499
6ZTJ|1|BA|G|500
6ZTJ|1|BA|A|501
6ZTJ|1|BA|A|502
6ZTJ|1|BA|A|503
6ZTJ|1|BA|A|504
6ZTJ|1|BA|A|505
6ZTJ|1|BA|G|506
6ZTJ|1|BA|A|507
6ZTJ|1|BA|A|508
6ZTJ|1|BA|C|509
6ZTJ|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L20

Chain BT

50S ribosomal protein L22

Chain BV

50S ribosomal protein L24