J3_6ZTL_004

3D structure

PDB id

6ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state bound to NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6ZTL|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTL_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0944

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6ZTL|1|AA|C|826
6ZTL|1|AA|U|827
6ZTL|1|AA|U|828
6ZTL|1|AA|G|829
*
6ZTL|1|AA|C|857
6ZTL|1|AA|G|858
6ZTL|1|AA|G|859
6ZTL|1|AA|A|860
6ZTL|1|AA|G|861
*
6ZTL|1|AA|C|868
6ZTL|1|AA|G|869
6ZTL|1|AA|U|870
6ZTL|1|AA|U|871
6ZTL|1|AA|A|872
6ZTL|1|AA|A|873
6ZTL|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21