3D structure

PDB id
6ZTL (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in collided state bound to NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
6ZTL|1|AA|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ZTL_004 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0944
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

6ZTL|1|AA|C|826
6ZTL|1|AA|U|827
6ZTL|1|AA|U|828
6ZTL|1|AA|G|829
*
6ZTL|1|AA|C|857
6ZTL|1|AA|G|858
6ZTL|1|AA|G|859
6ZTL|1|AA|A|860
6ZTL|1|AA|G|861
*
6ZTL|1|AA|C|868
6ZTL|1|AA|G|869
6ZTL|1|AA|U|870
6ZTL|1|AA|U|871
6ZTL|1|AA|A|872
6ZTL|1|AA|A|873
6ZTL|1|AA|G|874

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
30S ribosomal protein S2
Chain AH
30S ribosomal protein S8
Chain AU
30S ribosomal protein S21

Coloring options:


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