J3_6ZTL_034

3D structure

PDB id

6ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state bound to NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6ZTL|1|BA|A|504, 6ZTL|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTL_034 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1244

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6ZTL|1|BA|G|30
6ZTL|1|BA|C|31
*
6ZTL|1|BA|G|474
6ZTL|1|BA|C|475
6ZTL|1|BA|G|476
6ZTL|1|BA|A|477
6ZTL|1|BA|A|478
6ZTL|1|BA|A|479
6ZTL|1|BA|A|480
6ZTL|1|BA|G|481
6ZTL|1|BA|A|482
6ZTL|1|BA|A|483
6ZTL|1|BA|C|484
*
6ZTL|1|BA|G|496
6ZTL|1|BA|A|497
6ZTL|1|BA|G|498
6ZTL|1|BA|U|499
6ZTL|1|BA|G|500
6ZTL|1|BA|A|501
6ZTL|1|BA|A|502
6ZTL|1|BA|A|503
6ZTL|1|BA|A|504
6ZTL|1|BA|A|505
6ZTL|1|BA|G|506
6ZTL|1|BA|A|507
6ZTL|1|BA|A|508
6ZTL|1|BA|C|509
6ZTL|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L20

Chain BT

50S ribosomal protein L22

Chain BV

50S ribosomal protein L24