J3_6ZTM_004

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6ZTM|1|AA|U|871, 6ZTM|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTM_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0649

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6ZTM|1|AA|C|826
6ZTM|1|AA|U|827
6ZTM|1|AA|U|828
6ZTM|1|AA|G|829
*
6ZTM|1|AA|C|857
6ZTM|1|AA|G|858
6ZTM|1|AA|G|859
6ZTM|1|AA|A|860
6ZTM|1|AA|G|861
*
6ZTM|1|AA|C|868
6ZTM|1|AA|G|869
6ZTM|1|AA|U|870
6ZTM|1|AA|U|871
6ZTM|1|AA|A|872
6ZTM|1|AA|A|873
6ZTM|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21