3D structure

PDB id
6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in collided state without NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
6ZTM|1|AA|U|1240, 6ZTM|1|AA|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ZTM_013 not in the Motif Atlas
Homologous match to J3_5J7L_011
Geometric discrepancy: 0.1354
The information below is about J3_5J7L_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6ZTM|1|AA|C|1237
6ZTM|1|AA|A|1238
6ZTM|1|AA|A|1239
6ZTM|1|AA|U|1240
6ZTM|1|AA|G|1241
*
6ZTM|1|AA|C|1296
6ZTM|1|AA|G|1297
6ZTM|1|AA|U|1298
6ZTM|1|AA|A|1299
6ZTM|1|AA|G|1300
6ZTM|1|AA|U|1301
6ZTM|1|AA|C|1302
6ZTM|1|AA|C|1303
*
6ZTM|1|AA|G|1334
6ZTM|1|AA|U|1335
6ZTM|1|AA|C|1336
6ZTM|1|AA|G|1337

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AG
30S ribosomal protein S7
Chain AM
30S ribosomal protein S13

Coloring options:


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