J3_6ZTM_019

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTM_019 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0827

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ZTM|1|BA|C|1298
6ZTM|1|BA|G|1299
6ZTM|1|BA|G|1300
6ZTM|1|BA|A|1301
6ZTM|1|BA|A|1302
6ZTM|1|BA|G|1303
*
6ZTM|1|BA|C|1625
6ZTM|1|BA|A|1626
6ZTM|1|BA|G|1627
*
6ZTM|1|BA|C|1639
6ZTM|1|BA|A|1640
6ZTM|1|BA|A|1641
6ZTM|1|BA|G|1642

Current chains

Chain BA

23S ribosomal RNA

Nearby chains