J3_6ZTM_028

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

6ZTM|1|AA|C|48, 6ZTM|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTM_028 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0783

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZTM|1|AA|G|46
6ZTM|1|AA|C|47
6ZTM|1|AA|C|48
6ZTM|1|AA|U|49
6ZTM|1|AA|A|50
6ZTM|1|AA|A|51
6ZTM|1|AA|C|52
*
6ZTM|1|AA|G|359
6ZTM|1|AA|G|360
6ZTM|1|AA|G|361
6ZTM|1|AA|G|362
6ZTM|1|AA|A|363
6ZTM|1|AA|A|364
6ZTM|1|AA|U|365
6ZTM|1|AA|A|366
6ZTM|1|AA|U|367
*
6ZTM|1|AA|A|393
6ZTM|1|AA|G|394
6ZTM|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16