J3_6ZTN_027

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

6ZTN|1|AA|C|48, 6ZTN|1|AA|A|50, 6ZTN|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTN_027 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.093

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZTN|1|AA|G|46
6ZTN|1|AA|C|47
6ZTN|1|AA|C|48
6ZTN|1|AA|U|49
6ZTN|1|AA|A|50
6ZTN|1|AA|A|51
6ZTN|1|AA|C|52
*
6ZTN|1|AA|G|359
6ZTN|1|AA|G|360
6ZTN|1|AA|G|361
6ZTN|1|AA|G|362
6ZTN|1|AA|A|363
6ZTN|1|AA|A|364
6ZTN|1|AA|U|365
6ZTN|1|AA|A|366
6ZTN|1|AA|U|367
*
6ZTN|1|AA|A|393
6ZTN|1|AA|G|394
6ZTN|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16