J3_6ZTN_032

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6ZTN|1|BA|A|504, 6ZTN|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTN_032 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1259

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6ZTN|1|BA|G|30
6ZTN|1|BA|C|31
*
6ZTN|1|BA|G|474
6ZTN|1|BA|C|475
6ZTN|1|BA|G|476
6ZTN|1|BA|A|477
6ZTN|1|BA|A|478
6ZTN|1|BA|A|479
6ZTN|1|BA|A|480
6ZTN|1|BA|G|481
6ZTN|1|BA|A|482
6ZTN|1|BA|A|483
6ZTN|1|BA|C|484
*
6ZTN|1|BA|G|496
6ZTN|1|BA|A|497
6ZTN|1|BA|G|498
6ZTN|1|BA|U|499
6ZTN|1|BA|G|500
6ZTN|1|BA|A|501
6ZTN|1|BA|A|502
6ZTN|1|BA|A|503
6ZTN|1|BA|A|504
6ZTN|1|BA|A|505
6ZTN|1|BA|G|506
6ZTN|1|BA|A|507
6ZTN|1|BA|A|508
6ZTN|1|BA|C|509
6ZTN|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L20

Chain BT

50S ribosomal protein L22

Chain BV

50S ribosomal protein L24