J3_6ZTO_032

3D structure

PDB id

6ZTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6ZTO|1|BA|A|504, 6ZTO|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTO_032 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1139

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6ZTO|1|BA|G|30
6ZTO|1|BA|C|31
*
6ZTO|1|BA|G|474
6ZTO|1|BA|C|475
6ZTO|1|BA|G|476
6ZTO|1|BA|A|477
6ZTO|1|BA|A|478
6ZTO|1|BA|A|479
6ZTO|1|BA|A|480
6ZTO|1|BA|G|481
6ZTO|1|BA|A|482
6ZTO|1|BA|A|483
6ZTO|1|BA|C|484
*
6ZTO|1|BA|G|496
6ZTO|1|BA|A|497
6ZTO|1|BA|G|498
6ZTO|1|BA|U|499
6ZTO|1|BA|G|500
6ZTO|1|BA|A|501
6ZTO|1|BA|A|502
6ZTO|1|BA|A|503
6ZTO|1|BA|A|504
6ZTO|1|BA|A|505
6ZTO|1|BA|G|506
6ZTO|1|BA|A|507
6ZTO|1|BA|A|508
6ZTO|1|BA|C|509
6ZTO|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L20

Chain BT

50S ribosomal protein L22

Chain BV

50S ribosomal protein L24