J3_6ZTP_032

3D structure

PDB id

6ZTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 6

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6ZTP|1|BA|A|504, 6ZTP|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTP_032 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1139

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6ZTP|1|BA|G|30
6ZTP|1|BA|C|31
*
6ZTP|1|BA|G|474
6ZTP|1|BA|C|475
6ZTP|1|BA|G|476
6ZTP|1|BA|A|477
6ZTP|1|BA|A|478
6ZTP|1|BA|A|479
6ZTP|1|BA|A|480
6ZTP|1|BA|G|481
6ZTP|1|BA|A|482
6ZTP|1|BA|A|483
6ZTP|1|BA|C|484
*
6ZTP|1|BA|G|496
6ZTP|1|BA|A|497
6ZTP|1|BA|G|498
6ZTP|1|BA|U|499
6ZTP|1|BA|G|500
6ZTP|1|BA|A|501
6ZTP|1|BA|A|502
6ZTP|1|BA|A|503
6ZTP|1|BA|A|504
6ZTP|1|BA|A|505
6ZTP|1|BA|G|506
6ZTP|1|BA|A|507
6ZTP|1|BA|A|508
6ZTP|1|BA|C|509
6ZTP|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L20

Chain BT

50S ribosomal protein L22

Chain BV

50S ribosomal protein L24