J3_6ZU1_032

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6ZU1|1|BA|A|504, 6ZU1|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZU1_032 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1139

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6ZU1|1|BA|G|30
6ZU1|1|BA|C|31
*
6ZU1|1|BA|G|474
6ZU1|1|BA|C|475
6ZU1|1|BA|G|476
6ZU1|1|BA|A|477
6ZU1|1|BA|A|478
6ZU1|1|BA|A|479
6ZU1|1|BA|A|480
6ZU1|1|BA|G|481
6ZU1|1|BA|A|482
6ZU1|1|BA|A|483
6ZU1|1|BA|C|484
*
6ZU1|1|BA|G|496
6ZU1|1|BA|A|497
6ZU1|1|BA|G|498
6ZU1|1|BA|U|499
6ZU1|1|BA|G|500
6ZU1|1|BA|A|501
6ZU1|1|BA|A|502
6ZU1|1|BA|A|503
6ZU1|1|BA|A|504
6ZU1|1|BA|A|505
6ZU1|1|BA|G|506
6ZU1|1|BA|A|507
6ZU1|1|BA|A|508
6ZU1|1|BA|C|509
6ZU1|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L20

Chain BT

50S ribosomal protein L22

Chain BV

50S ribosomal protein L24