J3_6ZU5_004

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CCGAG*CGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZU5_004 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1991

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6ZU5|1|L50|C|583
6ZU5|1|L50|A|584
6ZU5|1|L50|G|585
*
6ZU5|1|L50|C|617
6ZU5|1|L50|C|618
6ZU5|1|L50|G|619
6ZU5|1|L50|A|620
6ZU5|1|L50|G|621
*
6ZU5|1|L50|C|646
6ZU5|1|L50|G|647
6ZU5|1|L50|C|648
6ZU5|1|L50|G|649

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LA0

uL2

Chain LGG

eL34

Chain LR0

eL19