J3_6ZU5_008

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGGGUC*GCAAG*CG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZU5_008 not in the Motif Atlas

Homologous match to J3_5TBW_010

Geometric discrepancy: 0.2694

The information below is about J3_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70383.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

6ZU5|1|L50|C|1228
6ZU5|1|L50|C|1229
6ZU5|1|L50|G|1230
6ZU5|1|L50|G|1231
6ZU5|1|L50|G|1232
6ZU5|1|L50|U|1233
6ZU5|1|L50|C|1234
*
6ZU5|1|L50|G|1264
6ZU5|1|L50|C|1265
6ZU5|1|L50|A|1266
6ZU5|1|L50|A|1267
6ZU5|1|L50|G|1268
*
6ZU5|1|L50|C|1285
6ZU5|1|L50|G|1286

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LGG

eL34

Chain LLL

eL39

Chain LX0

uL23