J3_6ZU5_012

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GCCUAGCGAUCC*GGUGGC

Length

21 nucleotides

Bulged bases

6ZU5|1|L50|G|2188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZU5_012 not in the Motif Atlas

Homologous match to J3_8C3A_056

Geometric discrepancy: 0.1154

The information below is about J3_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_27903.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ZU5|1|L50|G|2048
6ZU5|1|L50|U|2049
6ZU5|1|L50|C|2050
*
6ZU5|1|L50|G|2146
6ZU5|1|L50|C|2147
6ZU5|1|L50|C|2148
6ZU5|1|L50|U|2149
6ZU5|1|L50|A|2150
6ZU5|1|L50|G|2151
6ZU5|1|L50|C|2152
6ZU5|1|L50|G|2153
6ZU5|1|L50|A|2154
6ZU5|1|L50|U|2155
6ZU5|1|L50|C|2156
6ZU5|1|L50|C|2157
*
6ZU5|1|L50|G|2184
6ZU5|1|L50|G|2185
6ZU5|1|L50|U|2186
6ZU5|1|L50|G|2187
6ZU5|1|L50|G|2188
6ZU5|1|L50|C|2189

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LAA

uL15

Chain LOO

eL42

Chain LT0

eL21