J3_6ZUO_005

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZUO_005 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1156

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZUO|1|2|C|1218
6ZUO|1|2|C|1219
6ZUO|1|2|A|1220
6ZUO|1|2|G|1221
*
6ZUO|1|2|C|1645
6ZUO|1|2|C|1646
6ZUO|1|2|A|1647
6ZUO|1|2|G|1648
6ZUO|1|2|U|1649
6ZUO|1|2|A|1650
6ZUO|1|2|A|1651
*
6ZUO|1|2|U|1673
6ZUO|1|2|G|1674
6ZUO|1|2|A|1675
6ZUO|1|2|U|1676
6ZUO|1|2|U|1677
6ZUO|1|2|A|1678
6ZUO|1|2|A|1679
6ZUO|1|2|G|1680

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28