J3_6ZUO_008

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6ZUO|1|2|G|1274, 6ZUO|1|2|G|1507, 6ZUO|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZUO_008 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1253

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6ZUO|1|2|C|1272
6ZUO|1|2|C|1273
6ZUO|1|2|G|1274
6ZUO|1|2|G|1275
6ZUO|1|2|A|1276
6ZUO|1|2|C|1277
*
6ZUO|1|2|G|1320
6ZUO|1|2|G|1321
6ZUO|1|2|G|1322
6ZUO|1|2|U|1323
6ZUO|1|2|G|1324
*
6ZUO|1|2|U|1504
6ZUO|1|2|U|1505
6ZUO|1|2|A|1506
6ZUO|1|2|G|1507
6ZUO|1|2|A|1508
6ZUO|1|2|U|1509
6ZUO|1|2|G|1510

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a