J3_6ZUO_013

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6ZUO|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZUO_013 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.0776

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

6ZUO|1|2|A|40
6ZUO|1|2|G|41
6ZUO|1|2|A|42
6ZUO|1|2|U|43
6ZUO|1|2|U|44
6ZUO|1|2|A|45
6ZUO|1|2|A|46
6ZUO|1|2|G|47
*
6ZUO|1|2|C|479
6ZUO|1|2|G|480
6ZUO|1|2|C|481
6ZUO|1|2|G|482
6ZUO|1|2|C|483
6ZUO|1|2|A|484
6ZUO|1|2|A|485
6ZUO|1|2|A|486
6ZUO|1|2|U|487
*
6ZUO|1|2|A|512
6ZUO|1|2|G|513
6ZUO|1|2|U|514

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23