J3_6ZV6_002

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZV6_002 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2226

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZV6|1|2|A|816
6ZV6|1|2|G|817
6ZV6|1|2|A|818
6ZV6|1|2|G|819
*
6ZV6|1|2|C|829
6ZV6|1|2|A|830
6ZV6|1|2|G|831
*
6ZV6|1|2|C|843
6ZV6|1|2|U|844
6ZV6|1|2|G|845
6ZV6|1|2|G|846
6ZV6|1|2|A|847
6ZV6|1|2|U|848

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24