J3_6ZV6_005

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZV6_005 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.0972

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZV6|1|2|C|1218
6ZV6|1|2|C|1219
6ZV6|1|2|A|1220
6ZV6|1|2|G|1221
*
6ZV6|1|2|C|1645
6ZV6|1|2|C|1646
6ZV6|1|2|A|1647
6ZV6|1|2|G|1648
6ZV6|1|2|U|1649
6ZV6|1|2|A|1650
6ZV6|1|2|A|1651
*
6ZV6|1|2|U|1673
6ZV6|1|2|G|1674
6ZV6|1|2|A|1675
6ZV6|1|2|U|1676
6ZV6|1|2|U|1677
6ZV6|1|2|A|1678
6ZV6|1|2|A|1679
6ZV6|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28