J3_6ZVH_003

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZVH_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1869

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZVH|1|2|A|816
6ZVH|1|2|G|817
6ZVH|1|2|A|818
6ZVH|1|2|G|819
*
6ZVH|1|2|C|829
6ZVH|1|2|A|830
6ZVH|1|2|G|831
*
6ZVH|1|2|C|843
6ZVH|1|2|U|844
6ZVH|1|2|G|845
6ZVH|1|2|G|846
6ZVH|1|2|A|847
6ZVH|1|2|U|848

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24