J3_6ZVI_009
3D structure
- PDB id
- 6ZVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mbf1-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 6ZVI|1|h|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVI_009 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.157
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6ZVI|1|h|U|1283
6ZVI|1|h|C|1284
6ZVI|1|h|U|1285
6ZVI|1|h|U|1286
6ZVI|1|h|A|1287
6ZVI|1|h|G|1288
*
6ZVI|1|h|C|1327
6ZVI|1|h|G|1328
6ZVI|1|h|A|1329
6ZVI|1|h|G|1330
6ZVI|1|h|A|1331
6ZVI|1|h|C|1332
*
6ZVI|1|h|G|1419
6ZVI|1|h|C|1420
6ZVI|1|h|A|1421
6ZVI|1|h|A|1422
6ZVI|1|h|U|1423
6ZVI|1|h|A|1424
Current chains
- Chain h
- 18S rRNA
Nearby chains
- Chain C
- RPS20 isoform 1
- Chain O
- RPS29A isoform 1
- Chain k
- RPS2 isoform 1
- Chain l
- RPS3 isoform 1
- Chain y
- 40S ribosomal protein S16-A
- Chain z
- 40S ribosomal protein S17-A
Coloring options: