J3_6ZVI_010

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

6ZVI|1|h|A|1321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZVI_010 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.0948

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6ZVI|1|h|U|1293
6ZVI|1|h|G|1294
*
6ZVI|1|h|U|1303
6ZVI|1|h|G|1304
6ZVI|1|h|U|1305
6ZVI|1|h|C|1306
*
6ZVI|1|h|G|1318
6ZVI|1|h|A|1319
6ZVI|1|h|U|1320
6ZVI|1|h|A|1321
6ZVI|1|h|A|1322

Current chains

Chain h

18S rRNA

Nearby chains

Chain i

40S ribosomal protein S0-A

Chain k

RPS2 isoform 1

Chain z

40S ribosomal protein S17-A