J3_6ZVI_013

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6ZVI|1|h|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZVI_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0612

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ZVI|1|h|A|41
6ZVI|1|h|G|42
6ZVI|1|h|A|43
6ZVI|1|h|U|44
6ZVI|1|h|U|45
6ZVI|1|h|A|46
6ZVI|1|h|A|47
6ZVI|1|h|G|48
*
6ZVI|1|h|C|431
6ZVI|1|h|G|432
6ZVI|1|h|C|433
6ZVI|1|h|G|434
6ZVI|1|h|C|435
6ZVI|1|h|A|436
6ZVI|1|h|A|437
6ZVI|1|h|A|438
6ZVI|1|h|U|439
*
6ZVI|1|h|A|464
6ZVI|1|h|G|465
6ZVI|1|h|U|466

Current chains

Chain h

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S23-A

Chain q

40S ribosomal protein S8-A

Chain r

40S ribosomal protein S9-A