J3_6ZVK_006
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVK_006 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1176
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6ZVK|1|K3|U|1225
6ZVK|1|K3|G|1226
6ZVK|1|K3|G|1227
6ZVK|1|K3|A|1228
*
6ZVK|1|K3|U|1530
6ZVK|1|K3|A|1531
6ZVK|1|K3|C|1532
*
6ZVK|1|K3|G|1638
6ZVK|1|K3|G|1639
6ZVK|1|K3|A|1640
6ZVK|1|K3|A|1641
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain B3
- 40S RIBOSOMAL PROTEIN US9
- Chain E1
- INTERNAL RIBOSOME ENTRY SITE
- Chain G5
- ribosomal protein uS13
- Chain H5
- 40S RIBOSOMAL PROTEIN ES19
- Chain N3
- Ribosomal protein S5
Coloring options: