J3_6ZVK_008
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CGGAC*GGGUG*UUAGAUG
- Length
- 17 nucleotides
- Bulged bases
- 6ZVK|1|K3|G|1274, 6ZVK|1|K3|G|1507, 6ZVK|1|K3|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVK_008 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.5848
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6ZVK|1|K3|C|1273
6ZVK|1|K3|G|1274
6ZVK|1|K3|G|1275
6ZVK|1|K3|A|1276
6ZVK|1|K3|C|1277
*
6ZVK|1|K3|G|1320
6ZVK|1|K3|G|1321
6ZVK|1|K3|G|1322
6ZVK|1|K3|U|1323
6ZVK|1|K3|G|1324
*
6ZVK|1|K3|U|1504
6ZVK|1|K3|U|1505
6ZVK|1|K3|A|1506
6ZVK|1|K3|G|1507
6ZVK|1|K3|A|1508
6ZVK|1|K3|U|1509
6ZVK|1|K3|G|1510
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain E3
- S10_plectin domain-containing protein
- Chain H3
- ribosomal protein uS14
- Chain Q3
- 40S RIBOSOMAL PROTEIN ES31
Coloring options: