J3_6ZVK_020
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6ZVK|1|e2|A|1534, 6ZVK|1|e2|G|1641, 6ZVK|1|e2|A|1642
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVK_020 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.2801
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZVK|1|e2|U|1531
6ZVK|1|e2|G|1532
6ZVK|1|e2|A|1533
6ZVK|1|e2|A|1534
6ZVK|1|e2|C|1535
6ZVK|1|e2|U|1536
6ZVK|1|e2|A|1537
*
6ZVK|1|e2|U|1622
6ZVK|1|e2|A|1623
6ZVK|1|e2|G|1624
*
6ZVK|1|e2|C|1640
6ZVK|1|e2|G|1641
6ZVK|1|e2|A|1642
6ZVK|1|e2|A|1643
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain 92
- 60S RIBOSOMAL PROTEIN UL2
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
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