J3_6ZVK_027

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZVK_027 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2816

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6ZVK|1|e2|U|2575
6ZVK|1|e2|G|2576
*
6ZVK|1|e2|C|2585
6ZVK|1|e2|G|2586
6ZVK|1|e2|A|2587
6ZVK|1|e2|C|2588
6ZVK|1|e2|C|2589
*
6ZVK|1|e2|G|2756
6ZVK|1|e2|A|2757

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 22

60S ribosomal protein L27

Chain y2

eL34