J3_6ZVK_032
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 6ZVK|1|h2|A|62, 6ZVK|1|h2|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZVK_032 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1837
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
6ZVK|1|h2|A|44
6ZVK|1|h2|C|45
*
6ZVK|1|h2|G|58
6ZVK|1|h2|A|59
6ZVK|1|h2|G|60
6ZVK|1|h2|A|61
6ZVK|1|h2|A|62
6ZVK|1|h2|U|63
6ZVK|1|h2|U|64
*
6ZVK|1|h2|A|95
6ZVK|1|h2|C|96
6ZVK|1|h2|A|97
6ZVK|1|h2|C|98
6ZVK|1|h2|U|99
Current chains
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain A2
- uL29
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
- Chain m2
- 60S RIBOSOMAL PROTEIN UL23
Coloring options: