J3_6ZXD_005

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZXD_005 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1154

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZXD|1|2|C|1218
6ZXD|1|2|C|1219
6ZXD|1|2|A|1220
6ZXD|1|2|G|1221
*
6ZXD|1|2|C|1645
6ZXD|1|2|C|1646
6ZXD|1|2|A|1647
6ZXD|1|2|G|1648
6ZXD|1|2|U|1649
6ZXD|1|2|A|1650
6ZXD|1|2|A|1651
*
6ZXD|1|2|U|1673
6ZXD|1|2|G|1674
6ZXD|1|2|A|1675
6ZXD|1|2|U|1676
6ZXD|1|2|U|1677
6ZXD|1|2|A|1678
6ZXD|1|2|A|1679
6ZXD|1|2|G|1680

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28