J3_6ZXD_008
3D structure
- PDB id
- 6ZXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 6ZXD|1|2|G|1274, 6ZXD|1|2|G|1507, 6ZXD|1|2|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZXD_008 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.174
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6ZXD|1|2|C|1272
6ZXD|1|2|C|1273
6ZXD|1|2|G|1274
6ZXD|1|2|G|1275
6ZXD|1|2|A|1276
6ZXD|1|2|C|1277
*
6ZXD|1|2|G|1320
6ZXD|1|2|G|1321
6ZXD|1|2|G|1322
6ZXD|1|2|U|1323
6ZXD|1|2|G|1324
*
6ZXD|1|2|U|1504
6ZXD|1|2|U|1505
6ZXD|1|2|A|1506
6ZXD|1|2|G|1507
6ZXD|1|2|A|1508
6ZXD|1|2|U|1509
6ZXD|1|2|G|1510
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain K
- 40S ribosomal protein S10
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
- Chain z
- Serine/threonine-protein kinase RIO1
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