J3_6ZXE_012

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6ZXE|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZXE_012 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0636

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZXE|1|2|A|40
6ZXE|1|2|G|41
6ZXE|1|2|A|42
6ZXE|1|2|U|43
6ZXE|1|2|U|44
6ZXE|1|2|A|45
6ZXE|1|2|A|46
6ZXE|1|2|G|47
*
6ZXE|1|2|C|479
6ZXE|1|2|G|480
6ZXE|1|2|C|481
6ZXE|1|2|G|482
6ZXE|1|2|C|483
6ZXE|1|2|A|484
6ZXE|1|2|A|485
6ZXE|1|2|A|486
6ZXE|1|2|U|487
*
6ZXE|1|2|A|512
6ZXE|1|2|G|513
6ZXE|1|2|U|514

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain k

Leucine-rich repeat-containing protein 47