J3_6ZXF_002

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZXF_002 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2128

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZXF|1|2|A|816
6ZXF|1|2|G|817
6ZXF|1|2|A|818
6ZXF|1|2|G|819
*
6ZXF|1|2|C|829
6ZXF|1|2|A|830
6ZXF|1|2|G|831
*
6ZXF|1|2|C|843
6ZXF|1|2|U|844
6ZXF|1|2|G|845
6ZXF|1|2|G|846
6ZXF|1|2|A|847
6ZXF|1|2|U|848

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24