J3_6ZXG_006
3D structure
- PDB id
- 6ZXG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGGA*UAC*G(7MG)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZXG_006 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1025
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6ZXG|1|2|U|1225
6ZXG|1|2|G|1226
6ZXG|1|2|G|1227
6ZXG|1|2|A|1228
*
6ZXG|1|2|U|1530
6ZXG|1|2|A|1531
6ZXG|1|2|C|1532
*
6ZXG|1|2|G|1638
6ZXG|1|2|7MG|1639
6ZXG|1|2|A|1640
6ZXG|1|2|A|1641
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain Q
- 40S ribosomal protein S16
- Chain S
- 40S ribosomal protein S18
- Chain T
- 40S ribosomal protein S19
- Chain z
- Serine/threonine-protein kinase RIO1
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