J3_6ZXH_016

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(OMC)CGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6ZXH|1|2|G|1274, 6ZXH|1|2|G|1507, 6ZXH|1|2|U|1509

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZXH_016 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1237

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6ZXH|1|2|OMC|1272
6ZXH|1|2|C|1273
6ZXH|1|2|G|1274
6ZXH|1|2|G|1275
6ZXH|1|2|A|1276
6ZXH|1|2|C|1277
*
6ZXH|1|2|G|1320
6ZXH|1|2|G|1321
6ZXH|1|2|G|1322
6ZXH|1|2|U|1323
6ZXH|1|2|G|1324
*
6ZXH|1|2|U|1504
6ZXH|1|2|U|1505
6ZXH|1|2|A|1506
6ZXH|1|2|G|1507
6ZXH|1|2|A|1508
6ZXH|1|2|U|1509
6ZXH|1|2|G|1510

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a