J3_7A01_013

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

7A01|1|d2|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A01_013 not in the Motif Atlas

Homologous match to J3_5TBW_045

Geometric discrepancy: 0.1313

The information below is about J3_5TBW_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52398.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7A01|1|d2|C|9
7A01|1|d2|C|10
7A01|1|d2|A|11
7A01|1|d2|U|12
7A01|1|d2|A|13
7A01|1|d2|C|14
*
7A01|1|d2|G|65
7A01|1|d2|G|66
*
7A01|1|d2|U|109
7A01|1|d2|G|110

Current chains

Chain d2

5S RIBOSOMAL RNA

Nearby chains

Chain 72

eL21

Chain G2

60S ribosomal protein L5

Chain X2

Ribosomal protein L10 (Predicted)

Chain e2

Large subunit ribosomal RNA; LSU rRNA