J3_7A01_024

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

7A01|1|e2|U|2788

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A01_024 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.1334

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7A01|1|e2|G|2402
7A01|1|e2|A|2403
7A01|1|e2|A|2404
7A01|1|e2|G|2405
*
7A01|1|e2|C|2785
7A01|1|e2|C|2786
7A01|1|e2|A|2787
7A01|1|e2|U|2788
7A01|1|e2|A|2789
7A01|1|e2|U|2790
7A01|1|e2|C|2791
*
7A01|1|e2|G|2800
7A01|1|e2|U|2801
7A01|1|e2|C|2802

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain C2

Ribosomal protein L37

Chain D2

ribosomal protein eL39

Chain y2

eL34