J3_7A01_045

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UU*AGAAG*CGUGG

Length

12 nucleotides

Bulged bases

7A01|1|e2|A|1805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A01_045 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.5386

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_09667.1

Basepair signature

cWW-cWW-F-F-cSS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7A01|1|e2|U|1726
7A01|1|e2|U|1727
*
7A01|1|e2|A|1802
7A01|1|e2|G|1803
7A01|1|e2|A|1804
7A01|1|e2|A|1805
7A01|1|e2|G|1806
*
7A01|1|e2|C|1832
7A01|1|e2|G|1833
7A01|1|e2|U|1834
7A01|1|e2|G|1835
7A01|1|e2|G|1836

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 72

eL21

Chain U2

uL30

Chain r2

60S ribosomal protein L29