J3_7A09_002

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A09_002 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1947

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7A09|1|2|A|816
7A09|1|2|G|817
7A09|1|2|A|818
7A09|1|2|G|819
*
7A09|1|2|C|829
7A09|1|2|A|830
7A09|1|2|G|831
*
7A09|1|2|C|843
7A09|1|2|U|844
7A09|1|2|G|845
7A09|1|2|G|846
7A09|1|2|A|847
7A09|1|2|U|848

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S9

Chain q

40S ribosomal protein S4, X isoform

Chain z

40S ribosomal protein S24